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ORIGINAL COMMUNICATIONS
Genetic damage in mobile phone users: some preliminary findings
Gursatej Gandhi, Anita
May-August 2005, 11(2):99-104
DOI
:10.4103/0971-6866.16810
BACKGROUND:
The impact of microwave (MW)/radio frequency radiation (RFR) on important biological parameters is probably more than a simply thermal one. Exposure to radio frequency (RF) signals generated by the use of cellular telephones have increased dramatically and reported to affect physiological, neurological, cognitive and behavioural changes and to induce, initiate and promote carcinogenesis. Genotoxicity of RFR has also been reported in various test systems after
in vitro
and/or
in vivo
exposure but none in mobile phone users.
AIMS:
In the present study, DNA and chromosomal damage investigations were carried out on the peripheral blood lymphocytes of individuals using mobile phones, being exposed to MW frequency ranging from 800 to 2000 MHz.
METHODS:
DNA damage was assessed using the single cell gel electrophoresis assay and aneugenic and clastogenic damage by the
in vivo
capillary blood micronucleus test (MNT) in a total of 24 mobile phone users.
RESULTS:
Mean comet tail length (26.76 ± 0.054 mm; 39.75% of cells damaged) in mobile phone users was highly significant from that in the control group. The
in vivo
capillary blood MNT also revealed highly significant (0.25) frequency of micronucleated (MNd) cells.
CONCLUSIONS:
These results highlight a correlation between mobile phone use (exposure to RFR) and genetic damage and require interim public health actions in the wake of widespread use of mobile telephony.
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Prevalence of congenital heart diseases in Mysore
R Smitha, SC Karat, D Narayanappa, B Krishnamurthy, SN Prasanth, NB Ramachandra
January-April 2006, 12(1):11-16
DOI
:10.4103/0971-6866.25296
Background:
Prevalence studies on Congenital heart Diseases (CHDs) have been done several times world wide and such studies are very limited in Indian populations. A few earlier studies in India have reported an increased prevalence of CHDs ranging from 2.25 to 50.89 per 1000 live births.
Aims and Objective:
To study the prevalence of congenital heart diseases in Indian population.
Materials and Methods:
Data on the prevalence of CHDs were collected and analyzed from the three major hospitals of Mysore, Cheluvamba Hospital, CSI Holdsworth Memorial Hospital and J.S.S Hospital from the year 2000 to 2004.
Results:
The prevalence of CHDs for five years in Mysore hospitals ranges from 6.6 to 13.06 per 1000 live births. The most frequent type of CHD was found to be VSD (40.47%) followed by ASD (19.06%), TOF (13.38%) and PDA (9.53%). It is clear that the maximum CHDs were detected in the first year of life when compared to the later years of life. The prevalence of CHDs in Mysore is increasing from 2000 to 2004 which might be due to the improvement of diagnosis, attention or awareness among the medical authorities on the disease.
Conclusion:
The prevalence of CHDs in Mysore is not very high as reported in other parts of the country, however; it is an important disease which needs an immediate medical attention.
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362
REVIEW ARTICLE
The impact of consanguinity on the Indian population
AH Bittles
July-December 2002, 8(2):45-51
Numerous studies have been conducted by Indian anthropologists into the prevalence of both consanguineous and affinal marriage.1-3 and the topic of consanguinity continues to attract great attention among geneticists and social scientists. The strengthening of family relationships is of primary importance in the preference for close kin unions, with economic benefits an additional consideration. Consanguinity does not appear to adversely affect human fertility. However, both postnatal morbidity and mortality are increased, with greatest effect so far observed in the early years of life. With declining mortality and morbidity due to infectious disease, recessive genetic disorders will progressively gain greater prominence in the overall spectrum of ill-health. This change will be especially obvious in communities which practise consanguineous marriage, and in small highly endogamous communities where random drift occurs.
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Application of diagnostic methods and molecular diagnosis of hemoglobin disorders in Khuzestan province of Iran
Rahim Fakher, Kaeikhaei Bijan, Akbari Mohammad Taghi
January-April 2007, 13(1):5-15
DOI
:10.4103/0971-6866.32028
PMID
:21957335
Background
:
The hemoglobinopathies refer to a diverse group of inherited disorders characterized by a reduced synthesis of one or more globin chains (thalassemias) or the synthesis of structurally abnormal hemoglobin (Hb). The thalassemias often coexist with a variety of structural Hb variants giving rise to complex genotypes and an extremely wide spectrum of clinical and hematological phenotypes. Hematological and biochemical investigations and family studies provide essential clues to the different interactions and are fundamental to DNA diagnostics of the Hb disorders. Although DNA diagnostics have made a major impact on our understanding and detection of the hemoglobinopathies, DNA mutation testing should never be considered a shortcut or the test of first choice in the workup of a hemoglobinopathy.
Materials and Methods:
A careful three-tier approach involving: (1) Full blood count (2) Special hematological tests, followed by (3) DNA mutation analysis, provides the most effective way in which to detect primary gene mutations as well as gene-gene interactions that can influence the overall phenotype. With the exception of a few rare deletions and rearrangements, the molecular lesions causing hemoglobinopathies are all identifiable by PCR-based techniques. Furthermore, each at-risk ethnic group has its own combination of common Hb variants and thalassemia mutations. In Iran, there are many different forms of a and β thalassemia. Increasingly, different Hb variants are being detected and their effects per se or in combination with the thalassemias, provide additional diagnostic challenges.
Results:
We did step-by-step diagnosis workup in 800 patients with hemoglobinopathies who referred to Research center of Thalassemia and Hemoglobinopathies in Shafa Hospital of Ahwaz Joundishapour University of medical sciences, respectively. We detected 173 patients as iron deficiency anemia (IDA) and 627 individuals as thalassemic patients by use of different indices. We have successfully detected 75% (472/627) of the β -thalassemia mutations by using amplification refractory mutation system (ARMS) technique and 19% (130/627) of the β -thalassemia mutations by using Gap-PCR technique and 6% (25/627) as Hb variants by Hb electrophoresis technique. We did prenatal diagnosis (PND) for 176 couples which had background of thalassemia in first pregnancy. Result of PND diagnosis in the first trimester was 35% (62/176) affected fetus with β -thalassemia major and sickle cell disease that led to termination of the pregnancy.
Conclusion:
Almost all hemoglobinopathies can be detected with the current PCR-based assays with the exception of a few rare deletions. However, the molecular diagnostic service is still under development to try and meet the demands of the population it serves. In the short term, the current generation of instruments such as the capillary electrophoresis systems, has greatly simplified DNA sequence analysis.
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ORIGINAL COMMUNICATIONS
Cytogenetic causes for recurrent spontaneous abortions - An experience of 742 couples (1484 cases)
S Dubey, MR Chowdhury, B Prahlad, V Kumar, R Mathur, S Hamilton, M Kabra, P SN Menon, IC Verma
May-August 2005, 11(2):94-98
DOI
:10.4103/0971-6866.16809
BACKGROUND:
First trimester pregnancy loss is a very common complication and a matter of concern for couples planning pregnancy. Balanced chromosomal rearrangements in either parent is an important cause of recurrent pregnancy loss particularly in the first trimester.
AIMS:
In this study an evaluation of the contribution of chromosomal anomalies in causing repeated spontaneous abortions was made.
METHODS AND MATERIALS:
A review of the cytogenetic data in 742 couples (1484 individuals) with recurrent spontaneous abortions who were examined for chromosomal aberrations in the period 1990-2003 is presented. Women who had at least two abortions, or spontaneous abortions preceded or followed by fetal deaths or birth of a malformed child, and patients who had recurrent spontaneous abortions (> 3) with normal live issue/s were studied.
RESULTS:
Chromosomal rearrangements were found in 31 individuals (2%). These abnormalities included 22 (2.9%) structural aberrations, 9 (1.2%) numerical anomalies. In addition to these abnormalities, 21 (3.2%) chromosomal variants were also found.
CONCLUSION:
Chromosomal analysis is an important etiological investigation in couples with repeated spontaneous abortions as it helps in genetic counseling and deciding about further reproductive options.
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5,509
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Pericentric inversion of chromosome 9[inv(9)(p12q13)]: Its association with genetic diseases
Babu V Rao, Lily Kerketta, Seema Korgaonkar, Kanjaksha Ghosh
September-December 2006, 12(3):129-132
DOI
:10.4103/0971-6866.29856
Background:
The chromosomal polymorphism of short arms of acrocentric chromosomes and heterochromatin variation of Chromosomes 1, 9, 16 and Y have been reported in humans. The pericentric inversion of Chromosome 9 is commonly seen in normal humans and the frequency estimated to be 1 to 3% in general population and inherited in mendalian fashion or might occur spontaneously without any clinical significance.
Aim:
The aim of the study was to study the frequency of inv(9) and its clinical correlation with human genetic diseases.
Materials and Methods:0
The chromosomal analysis using GTG-banding was carried out in 3,392 cases suspected with genetic diseases.
Results:
The pericentric inversion frequency of different chromosomes in our study was 1.24% and frequency of inv(9)(p12q13) was high (64.29%) compared to other pericentric inversions in our study. A high frequency (9.33%) of inv(9)(p12q13) was detected in children with dysmorphic features and congenital anomalies.
Conclusion:
As a high frequency of inv(9)(p12q13) detected in children with dysmorphic features, the inv(9) definitely have a role in the abnormal phenotype development. During inversion event there might be loss or suppression of euchromatin chromosome region and hence detailed chromosomal break point study is important to understand the clinical significance of the pericentric inversion of Chromosome 9.
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SHORT COMMUNICATION
Genetic heterogeneity of population structure in 15 major scheduled tribes in central-eastern India: A study of immuno-hematological disorders
RS Balgir
May-August 2006, 12(2):86-92
DOI
:10.4103/0971-6866.27792
Background:
0 The aboriginal tribes of India constitute an important segment of the society in the world. Though a large number of genetic studies have been carried out in India, the genetic data of the populations in the state of Orissa are very limited, especially pertaining to the indigenous tribal people. Most of the earlier studies were restricted to either a single tribe or a few genetic markers. Data on population structure of tribal communities of Orissa pertaining to common hemolytic disorders and genetic variations are still scanty.
AIMS AND OBJECTIVES:
In view of the limited data available on the tribes and the huge tribal population, a cross-section of
ashram
schools was investigated for immuno-hematological disorders in relation to geographical, linguistic and genetic variations.
MATERIALS AND METHODS:
A cross-section of 15 major scheduled tribes in ashram schools from eight districts of Orissa was randomly studied for five hereditary immuno-hematological markers, namely, the ABO and Rhesus (D) blood groups, sickle cell hemoglobinopathy, β -thalassemia syndrome and G-6-PD deficiency, following the standard hematological procedures and techniques.
RESULTS:
A preponderance of blood group B over A and low incidence of Rhesus-negative (D-) among Bathudi, Bhuyan, Kissan, Kolha, Kondh, Munda oraon, Paraja, Santal and Saora tribes was observed. The deficiency of G-6-PD enzyme was found to be quite high, varying from 5.1 to 15.9% among these scheduled tribes of Orissa. Both deficient female heterozygotes and homozygotes were encountered. Marked variation was seen in the prevalence of β -thalassemia trait, varying from 0 to 8.5%, in the aboriginal tribes. The frequency of sickle cell disorders was found to vary from 0 to 22.4% among the major tribes, but it was comparatively higher in Paraja (21.5%), Dhelki Kharia (13.7%), Gond (11.9%) and Bhatra (10.5%) tribes.
CONCLUSIONS:
The study showed genetic heterogeneity and diversity with respect to above immuno-hematological genetic markers and indicated not only the inter-tribal admixture but also diffusion with other racial groups of India. Further, the heterogeneous tribal populations from Orissa were found to harbor almost all major hemoglobinopathies. This is the first comprehensive study of immuno-hematological disorders among the scheduled tribes from the state of Orissa.
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ORIGINAL ARTICLES
Frequency of β-thalassemia trait and other hemoglobinopathies in northern and western India
Nishi Madan, Satendra Sharma, SK Sood, Roshan Colah, HM Bhatia
January-April 2010, 16(1):16-25
DOI
:10.4103/0971-6866.64941
PMID
:20838487
Introduction
: India is an ethnically diverse country with an approximate population of 1.2 billion. The frequency of beta-thalassemia trait (βTT) has variously been reported from <1% to 17% and an average of 3.3%. Most of these studies have been carried out on small population groups and some have been based on hospital-based patients. There is also a variation in the prevalence of hemoglobinopathies in different regions and population groups in the country. A high frequency of Hb D has been reported from the North in the Punjabi population, Hb E in the eastern region of India and Hb S is mainly reported from populations of tribal origin from different parts of the country.
Objectives:
To study the gene frequency of βTT and other hemoglobinopathies in three regions East (Kolkata), West (Mumbai) and North (Delhi) in larghe population group (schoolchildren) for a more accurate assessment of gene frequency for planning of control programmes for haemoglobinopathies.
Materials and Methods:
This study included 5408 children from 11 schools in Delhi, 5682 from 75 schools in Mumbai and 957 schoolchildren from Kolkata who were screened for βTT and haemoglobinopathies. These included 5684 children from 75 schools in Mumbai and 5408 children from 11 schools in Delhi. Children were 11-18 years of age of both sexes. The final report is, however, only on 11090 schoolchildren from Mumbai and Delhi as data from Kolkata was restricted both in numbers and objectives and could not be included for comparison.
Results:
The overall gene frequency of βTT in Mumbai and Delhi was 4.05% being 2.68% and 5.47% in children of the two cities respectively. In Mumbai, the gene frequency was evenly distributed. Majority of the children with βTT from Mumbai were from Marathi (38.9%) and Gujarati (25%) speaking groups. Gene frequency was >5% in Bhatias, Khatris, Lohanas and Schedule Castes. In Delhi, a higher incidence was observed in schoolchildren of North and West Delhi (5.8-9.2%). The schoolchildren of North and West Delhi comprised predominantly of Punjabi origin compared to children in the South of the city (2.2%, 2.3%). When analyzed state-wise, the highest incidence was observed in children of Punjabi origin (7.6%) and was >4% from several other states. Majority of the traits from Mumbai were anemic (95.1% male and 85.6% in female). The prevalence of anemia was lower (62.7% male and 58.4% female) children with βTT from Delhi. This was a reflection of the higher prevalence of anemia in children without hemoglobinopathy in Mumbai than in Delhi. Nutritional deficiency was probably more severe and rampant in children Mumbai. Gene frequency of Hb D was greater in schoolchildren from Delhi (1.1%) than in Mumbai (0.7%). Hb S trait (0.2%) was observed exclusively in children from Mumbai. A low incidence of Hb E trait (0.04%) was seen in children in Mumbai. A higher incidence is reported from the East. The number of cases studied from the eastern region was small as the data from the East (Kolkata) could not be included in the analysis.
Conclusion:
This study comprises a larger number of children studied for the gene frequency of βTT and other hemoglobinopathies from India. Population groups with higher gene frequencies require screening programmes and facilities for antenatal diagnosis as well as increased awareness and educational programmes to control the birth of thalassemic homozygotes. The overall carrier frequency of βTT was 4.05% and reinforces the differential frequency of β-thalassemia trait in schoolchildren from Delhi and Mumbai and the higher incidence of hemoglobin D in Punjabis as reported previously. The birth incidence calculated thereof for homozygous thalassemics would be 11,316 per year which are added each year to the existing load of homozygous thalassemics. This is much higher than the previously reported number of births annually. Hence suitable control measures need to be undertaken urgently in India.
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311
ORIGINAL COMMUNICATIONS
Molecular characterization of mutations causing β -thalassemia in Faisalabad Pakistan using the amplification refractory mutation system (ARMS-PCR)
Shahid M Baig, F Rabbi, U Hameed, JA Qureshi, Z Mahmood, SH Bokhari, A Kiani, H Hassan, JM Baig, A Azhar, T Zaman
May-August 2005, 11(2):80-83
DOI
:10.4103/0971-6866.16806
BACKGROUND
: Faisalabad is the third biggest city of Pakistan. Majority of the population is Punjabi while other ethnic groups are in minority.
AIMS
: The present study was undertaken to find the mutations causing β -thalassemia in Faisalabad Pakistan.
MATERIALS AND METHODS
: A total of 285 β -globin alleles from 143 unrelated families having at least one transfusion-dependent child were analyzed by using amplification refractory mutation system (ARMS-PCR).
RESULTS
: FSC-8/9 (+G) and IVS-I-5 (G ®C) were the most common mutations. The allele frequency for FSC-8/9 (+G) was 38.59% while frequency for IVS-I-5 (G ®C) was 37.89%. The high frequency (76.48%) of IVS-I-5 (G ®C) and FSC-8/9 (+G) on various alleles provides a strong evidence of intermarriages.
CONCLUSIONS
: By using ARMS-PCR, the mutations were successfully characterized in 95.79% of subjects, while 4.21% remain to be characterized. This study will facilitate the implementations of genetic counseling and prenatal diagnosis in the population of Faisalabad.
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8,305
524
REVIEW ARTICLE
An understanding the genetic basis of congenital heart disease
Smitha Ramegowda, Nallur B Ramachandra
January-June 2005, 11(1):14-23
DOI
:10.4103/0971-6866.16289
The recent exponential increase in the knowledge of genetics has revolutionized the understanding of congenital heart diseases (CHDs) during the past few decades. Prior studies have reported the influence of Mendelian disorders on CHDs to be very small, when compared to the polygenic inheritance, which constituted a higher percentage. The recent findings of candidate genes responsible for CHDs have provided new insights into the genetic basis of heart malformation. Here we reviewed the understandings of different types of heart lesions associated with syndromes for which genetic etiologies are apparent, as well as the recent developments involving the molecular pathways involved in CHDs in case of human beings. The similar mutations, which are the devastating events of molecular mechanism, may be the cause of different types of CHDs indicating single gene defects as the cause of different apparent phenotypes. An integrated simple model will explain the causes of presently well known CHDs. This review provides updated information on the genetic basis for cardiac defects which helps to understand, identify, prevent and treat individuals who might be at risk at an early stage. There is a need to find heart defects as early as possible so that they can be treated while the heart is still forming.
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7,082
498
LETTER TO EDITOR
A rare presentation of Bardet-Biedl syndrome with renal failure, severe osteodystrophy and multiple fractures
S Gupta, D Goel, A Singhal
September-December 2005, 11(3):159-160
DOI
:10.4103/0971-6866.19538
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5
5,604
118
ORIGINAL ARTICLES
Can novel Apo A-I polymorphisms be responsible for low HDL in South Asian immigrants?
Sunita Dodani, Yanbin Dong, Haidong Zhu, Varghese George
January-April 2008, 14(1):9-15
DOI
:10.4103/0971-6866.42321
PMID
:20300285
Coronary artery disease (CAD) is the leading cause of death in the world. Even though its rates have decreased worldwide over the past 30 years, event rates are still high in South Asians. South Asians are known to have low high-density lipoprotein (HDL) levels. The objective of this study was to identify Apolipoprotein A-I (Apo A-I) polymorphisms, the main protein component of HDL and explore its association with low HDL levels in South Asians. A pilot study on 30 South Asians was conducted and 12-h fasting samples for C-reactive protein, total cholesterol, HDL, low-density lipoprotein (LDL), triglycerides, Lipoprotein (a), Insulin, glucose levels, DNA extraction, and sequencing of Apo A-I gene were done. DNA sequencing revealed six novel Apo A-I single nucleotide polymorphisms (SNPs) in South Asians, one of which (rs 35293760, C938T) was significantly associated with low (<40 mg/dl) HDL levels (
P
= 0.004). The association was also seen with total cholesterol (
P
= 0.026) and LDL levels (
P
= 0.032). This pilot work has highlighted some of the gene-environment associations that could be responsible for low HDL and may be excess CAD in South Asians. Further larger studies are required to explore and uncover these associations that could be responsible for excess CAD risk in South Asians.
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3,693
200
SHORT ARTICLE
Consanguinity and chromosomal abnormality
S Amudha, N Aruna, S Rajangam
May-August 2005, 11(2):108-110
DOI
:10.4103/0971-6866.16812
BACKGROUND
: Consanguinity is defined as the marriage between close relatives. The deleterious effects associated with consanguinity may be caused by the expression of rare recessive genes inherited from common ancestors.
AIMS AND OBJECTIVES
: The present study was undertaken to analyze the effect of consanguinity on chromosomal abnormality (CA).
METHODS AND MATERIALS
: During last 6 years period, a total of 1465 cases with suspected genetic etiology like bad obstetric history, mental retardation, multiple congenital anomalies, Down syndrome, primary amenorrhea and primary infertility was referred to Division of Human Genetics for karyotyping and genetic counseling. The information regarding consanguinity was obtained through pedigree analyzes up to three generations from all the patients. Chi-square test was applied to test the significance.
RESULTS
: Consanguinity was seen in 427 cases (29.14%), 305 cases were confirmed to have CA, among them 240 (78.7%) had numerical abnormality and 65 (21.3%) had structural abnormality. The presence of consanguinity in CA was seen in 53 cases (17%), including 43 (81.1%) with numerical and 10 (18.9%) with structural abnormality.
CONCLUSION
: The effect of consanguinity on CA was almost significant (
P
< 0.001), whereas the effect was not significant for the type of CA. It may be because of the pooled types of consanguinity as well as the CA. Further information is needed to state categorically that there could be the effect of consanguinity on CA.
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241
ORIGINAL COMMUNICATIONS
Fluctuating asymmetry in dermatoglyphics of non-insulin-dependent diabetes mellitus in Bangalore-based population
R Ravindranath, AM Joseph, SI Bosco, S Rajangam, V Balasubramanyam
September-December 2005, 11(3):149-153
DOI
:10.4103/0971-6866.19535
Background:
The aetiology of NIDDM is believed to be as a consequence of genetic and environmental factors that impair metabolism. While little can be done on the genetic component, much can be done as a preventive measure in NIDDM. Because nothing much can be done prenatally, researchers have resorted to studying physical variables like dermatoglyphics (DGs). Dermatoglyphic patterns form on the finger pad and the palm prenatally and remain unchanged throughout life, thus these features may serve as markers for fetal origin of adult disease like NIDDM. Thus the concept of fluctuating asymmetry (FA) which has been defined as random differences between the right (R) and left (L) sides of a morphological trait has gained prominence in diseases like schizophrenia. When the distribution of R-L differences in a population sample approximates a normal curve with a mean approximately equal to zero, the variance of distributions of R-L difference is a measure of FA. Studies have shown that genetic factors may also have a link to FA in finger and a-b ridge counts. No studies have been reported on FA in NIDDM. FA derived from quantitative parameters in DGs of NIDDM may throw light on fetal origins of an adult disease. Hence this study has been undertaken.
Aim:
The present study aims at deriving FA from quantitative parameters in DGs of NIDDM compared to controls in the Bangalore based population.
Materials and Methods:
Bilateral rolled finger and palm prints of 150 NIDDM patients (Males - 75, Females - 75) were compared to 120 controls (Males - 60, females -60) from Bangalore based population. FA measures derived from quantitative parameters (finger ridge counts, a-b ridge counts, main line index and palmar angles) were analysed.
Results:
Comparisons were made in all parameters between homologous fingers of both hands using Pearson's product moment correlation coefficients (r). The difference in correlation coefficients between cases and controls was calculated using Fisher's Z transformation. 1-r2 an estimate of error variance thus measures FA. FA measures were significantly higher in NIDDM males for the 5th finger (FA=2.04) and for the palmar angle 'dat' (FA=2.24); for the NIDDM female a high FA was found in the 2nd finger (FA=2.17) compared to controls.
CONCLUSION:
Overall measures of the above ridge counts and angles and their derived measures of FA were prominent features of NIDDM in this sample.
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CASE REPORTS
Facio-auricular vertebral syndrome-a case report
M V. V. Reddy, PP Reddy, P Usha Rani, L Hema Bindu
September-December 2005, 11(3):156-158
DOI
:10.4103/0971-6866.19537
Facio Auricular Vertebral (FAV) or Goldenhar syndrome is a very rare kind of syndromic deafness and is inherited as autosomal dominant. A study was taken up to understand the prevalence of this syndrome in children below the age of 14 years with hearing loss. Out of 1073 children with hearing impairment, Goldenhar syndrome was observed only in 1 (0.09%) case. The child suffered severe hearing loss. Facial paralysis and hemifacial microsomia were prominent features observed in the child. Facio-Auricular-Vertebral syndrome is therefore synonymously used with Goldenhar syndrome.
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ORIGINAL ARTICLES
High risk of essential hypertension in males with intron 4 VNTR polymorphism of
eNOS
gene
Sushma Patkar, BH Charita, C Ramesh, T Padma
May-August 2009, 15(2):49-53
DOI
:10.4103/0971-6866.55215
PMID
:20680151
In this study 250 patients with essential hypertension were investigated in comparison to 218 normotensives for association with epidemiological parameters. Of these DNA samples from 176 patients and 168 controls were analyzed for intron 4 27bp repeat polymorphism of
eNOS
gene. The study revealed significantly high risk of essential hypertension for individuals who were obese, with a positive family history and with non-vegetarian food habits. Though the intron 4b/a polymorphism of
eNOS
gene did not reveal any association with essential hypertension in general, males with a/a genotype of the polymorphism did show significantly high risk for developing hypertension.
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2,145
340
ORIGINAL COMMUNICATIONS
Detection of two rare β -thalassemia mutations [-90 (C ® T) and CD 26 (C ®T)] among Indians
A Gorakshakar, S Phanasgaonkar, R Colah, D Mohanty
May-August 2005, 11(2):76-79
DOI
:10.4103/0971-6866.16805
BACKGROUND
: β -Thalassemia (β -thal) is present in practically every caste group in Indians. Molecular characterization of β -thal in these groups has revealed an extremely heterogeneous picture.
AIM
: To identify all the mutations and to detect the novel mutations using a versatile mutation detection technique.
MATERIALS AND METHODS
: Denaturing gradient gel electrophoresis (DGGE) has been established to scan the entire β -globin gene to localize the mutation followed by DNA sequencing for characterization. The DNA samples from two families referred to us either for prenatal diagnosis or for DNA studies were studied.
RESULTS
: Atypical DGGE patterns in fragments B & A indicating the presence of the mutation, have been detected in both the families. DNA sequencing revealed two rare patterns fragments with patterns in fragments β -thal mutations [CD 26 (C®T) and -90 (C®T)].
CONCLUSION
: DGGE is a useful mutation detection technique to identify β -thal mutations among the heterogeneous Indian population.
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3
4,047
279
REVIEW ARTICLE
Contribution of genomics, proteomics, and single-nucleotide polymorphism in toxicology research and Indian scenario
S Patel, D Parmar, YK Gupta, MP Singh
May-August 2005, 11(2):61-75
DOI
:10.4103/0971-6866.16804
Advancement in the molecular tools used in toxicology has provided immense information about the cellular and global structure and function of toxicant-responsive genes. Now, it has become possible to assess the functional activity of genes and proteins involved in various toxicological pathways, which were not possible with the conventional methods. Many genes are known to have a greater influence on the susceptibility to environmental agents than others; therefore, identification and characterization of polymorphism in such genes for the determination of early, late, or no response of an individual for the toxicant-induced diseases has also become mandatory. Toxicogenomics, a newly born discipline of toxicology, comprises of two major facets, one, how various genes in the genome respond to environmental toxicants and stressors and second, how toxicants modify the function and expression of specific genes in the genome. Toxicogenomics play an important role in the identification and characterization of molecular biomarkers to predict cellular toxicity and to determine the efficacy and exposure in the toxicity trials at an early stage. Genome and proteome-wide expression profiles in combination with conventional toxicology are being used to classify compounds, predict the mechanism of toxicity of newer compounds and determine the susceptibility of an individual for the toxic responses. Single-nucleotide polymorphism in toxicant-responsive genes is being used to obtain basic information of the genetic variation and its role in the functional protein expression. Various national and international government and private organizations have launched several programs on gene-environment interactions. Council of Scientific and Industrial Research (CSIR), New Delhi, India, has also launched a program on 'toxicogenomics of genetic polymorphism in Indian population to industrial chemicals for development of biomarkers' to provide better ventures and facilities to researchers in order to understand the environment-genome interactions. In this review, the contribution of genomics, proteomics, and SNPs in toxicology along with its current status in India has been discussed
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ORIGINAL COMMUNICATIONS
Heterozygosity and allele frequencies of the two VNTRs (ApoB and D1S80) in Iranian population
Nejat Mahdieh, Elham Tafsiri, Morteza Karimipour, Mohammad T Akbari
January-June 2005, 11(1):31-34
DOI
:10.4103/0971-6866.16292
Genetic markers are used for identity testing and paternity analysis depends on knowing the allele frequencies in the population. Minisatellites show allelic variability in the number of repeat units. We have studied the allele frequencies and heterozygosity of two VNTRs (ApoB and D1S80) in Iranian populations. A total of 96 and 82 chromosomes were analyzed by PCR and gel electrophoresis for ApoB and D1S80 respectively. In the ApoB system, allele 37 was the most common followed by allele 35 whereas allele 23 was the most common followed by allele18 at the D1S80 locus. Observed heterozygosity was relatively low in ApoB than D1S80 locus, however, no significant differences were found between observed and expected heterozygosity.
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CASE REPORTS
Down syndrome child with 48,XXY,+21 karyotype
Cyril Cyrus, N Chandra, T Jegatheesan, K Chandralekha, A Ramesh, PM Gopinath, KM Marimuthu
January-June 2005, 11(1):47-48
DOI
:10.4103/0971-6866.16296
Cytogenetic analysis in 60 clinically suspected cases of Down syndrome and their parents was carried out using conventional Giemsa-trypsin-banding technique. Fifty-five individuals (91%) exhibited a free trisomy 21. Robertsonian translocations were seen in three cases and two cases exhibited a normal karyotype. A four-month-old child, the second-born of non-consanguineous parents, possessed an extra X chromosome in addition to trisomy 21. The proband's parents and his brother showed a normal karyotype. The phenotypic characteristics of this child have been discussed in the light of the published reports on double aneuploidies of XXY and trisomy 21.
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Nucleolar organising region evaluation using new NOR FISH probe
Babu V Rao, K Ghosh, D Mohanty
January-June 2005, 11(1):44-46
DOI
:10.4103/0971-6866.16295
We have carried out chromosomal analysis in a couple with repeated spontaneous abortions (RSA). The chromosomal analysis of male revealed 15ps+ and the chromosome 15 appeared as submetacentric, C- group chromosome. First time we have attempted fluorescence in situ hybridization (FISH) using NOR probe (dJ1174 A5) and FISH analysis revealed NOR duplication on chromosome 15 which was also quantitated using Q-FISH software. The identical NOR duplication also detected in chromosome preparations from products of conception. However, NOR studies in large group of patients is necessary to understand the role of NORs in RSA.
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SHORT ARTICLE
Physical growth of children with sickle cell disease
Malay B Mukherjee, RR Gangakhedkar
July-December 2004, 10(2):70-72
Anthropometric measurements were used to study the physical growth of 58 sickle cell disease(SS) children with severe clinical manifestations and compared with 86 normal(AA) children from Nagpur district of Maharashtra. Both sickle cell disease male and female children were shown to have statistically significant lower weights, heights, sitting heights, mid arm circumferences, skin fold thickness and body mass indexes but not upper/ lower segment ratio as compared to normal children with comparable sex and ages. No significant differences were observed between the male and female children with sickle cell disease or normal for any of the anthropometric measurements. A significant lower values of all the measurements except U/L ratio was observed in the age group of 11-14 years than the earlier age among the sickle cell disease children as compared to the normal children of the same age and sex groups. Thus, these results indicate that as a group, children with sickle cell disease weigh less, are shorter and undernourished as compared to normal children.
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ORIGINAL COMMUNICATIONS
HLA-A allele frequency and haplotype distribution in the dravidian tribal communities of south India
R Thomas, M Banerjee
September-December 2005, 11(3):140-144
DOI
:10.4103/0971-6866.19533
Background:
The tribal communities of South India are considered to be the original inhabitants of the Indian sub-continent, belonging to the most primitive Dravidian speaking communities. These Dravidian speaking forest dwelling tribal populations have remained isolated from any intermingling with other non-tribal communities.
Aims and Objectives:
We propose to understand the evolutionary processes mediated by molecular, functional and immunological information based on human leukocyte antigen (HLA) genetic system.
Material and Methods:
The HLA-A diversity was analyzed in seven Dravidian tribal populations namely Malapandaram, Paniya, Kurichiya, Kanikkar, Adiya, Kattunaikka and Kuruma of Kerala, South India using the PCR-SSP method. The tribal communities were compared with a group comprising of random non-tribal Dravidian samples of southern India.
Results:
In the present study, 11 HLA-A alleles were identified in the South Indian population. The most frequent alleles included HLA-A*24, A*02, A*33 and *A11. HLA-A*24 had the highest frequency in all the tribal groups while, A*02 was the highest frequency allele in the RND group. The haplotype Cw*14-A*24 was present in all the populations. The three-locus haplotype B*52-Cw*14-A*24 was observed in all the populations except Kurichiya and Kanikkar.
Conclusion:
The study suggests that the RND population is highly diverse and more likely to have an admixed origin.
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CASE REPORTS
Hemoglobin sickle D Punjab-a case report
MB Mukherjee, RR Surve, RR Gangakhedkar, D Mohanty, RB Colah
September-December 2005, 11(3):154-155
DOI
:10.4103/0971-6866.19536
Compound heterozygosity for bS/bD results in a severe hemolytic anemia and a clinical syndrome similar to that of sickle cell disease. Here, we report a case of HbSD Punjab disease. A 10 year old female child residing at Nagpur, Maharashtra presented with severe hemolytic anemia, hepatosplenomegaly and occasional pains in bones and abdomen. Initially, she was thought to be a case of sickle cell anemia, however, with the help of HPLC and molecular analysis it was confirmed as HbSD Punjab disease.
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Y chromosome microdeletions in Turkish infertile men
Ayse Gul Zamani, Ruhusen Kutlu, H Gul Durakbasi-Dursun, Huseyin Gorkemli, Aynur Acar
May-August 2006, 12(2):66-71
DOI
:10.4103/0971-6866.27788
AIMS:
To detect the frequency and types of both chromosomal abnormalities and Y chromosome microdeletions in infertile men attending to our university intracytoplasmic sperm injection ICSI/IVF centre and fertile control subjects in our patient population.
SETTINGS AND DESIGN:
A total of 50 infertile men who were referred to IVF center of Meram medical faculty were selected for the molecular azospermia factor (AZF) screening program.
MATERIALS AND METHODS:
Karyotype analysis and polymerase chain reaction amplification using 15 Y-specific sequence-tagged sites of AZF region were done.
RESULTS:
The total prevalence of chromosomal abnormalities was found to be 10% (5/50), including 4 patients with numerical and 1 patient with structural abnormalities. Overall, 4 of the 50 patients tested (8%) exhibited deletions of the Y chromosome, 3 of them being azospermic and 1 of them oligospermic men. The frequency of the microdeletions in subgroups with azospermia and oligozoospermia was found to be 10.7% (3/29) and 4.7% (1/21) respectively. Microdeletions of AZFb and AZFc regions were detected in all of the 4 patients. Neither AZFa nor AZFd microdeletions were indicated.
CONCLUSIONS:
Our findings suggest that one must know whether there is a genetic cause for male infertility before patients can be subjected to ISCI or testicular sperm extraction (TESE)/ISCI treatment.
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© 2006 - Indian Journal of Human Genetics | Published by
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Online since 1
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February, 2006