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May-August 2010
Volume 16 | Issue 2
Page Nos. 45-104
Online since Thursday, September 16, 2010
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EDITORIAL
Integration of modern genetic knowledge and technology into public health in India
p. 45
Kanjaksha Ghosh, Ajit Gorakshakar
DOI
:10.4103/0971-6866.69325
PMID
:21031050
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REVIEW ARTICLE
Genetics in public health: Rarely explored
p. 47
YB Aswini, S Varun
DOI
:10.4103/0971-6866.69326
PMID
:21031051
The availability and the integration of genetic information into our understanding of normal and abnormal growth and development are driving important changes in health care. These changes have fostered the hope that the availability of genetic information will promote a better understanding of disease etiology and permit early, even pre-symptomatic diagnosis and preventive intervention to avoid disease onset. Hence, our aim was to review and provide the insight into the role of genetics in public health and its scope as well as barriers. The use of genetics along with their goals and essential public health functions are discussed. From the era of eugenics to the present era, this area has seen many turns in which geneticists have put through their effort to tie together the strings of both molecular genetics and public health. Though still the dark clouds of eugenics, the predictive power of genes, genetic reductionism, non-modifiable risk factors, individuals or populations, resource allocation, commercial imperative, discrimination and understanding and education are hanging above. The technological and scientific advances that have fundamentally changed our perception of human diseases fuel the expectations for this proactive health.
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ORIGINAL ARTICLES
Haplotype diversity and linkage disequilibrium at the
DRD2
locus among the tribes of western and southern regions of India
p. 55
Aastha Aggarwal, Mansi Gauniyal, Ipsa Pattanayak, Gautam K Kshatriya
DOI
:10.4103/0971-6866.69327
PMID
:21031052
Background:
Dopamine receptor D2 (DRD2) is an important gene having functional significance in the fields of neuropsychiatry and pharmacology and also has importance in evolutionary studies.
Materials and Methods:
This study was undertaken to find out the haplotype distribution and linkage disequilibrium (LD) pattern for the three
TaqI
sites (
TaqI
'A',
TaqI
'B' and
TaqI
'D') in the DRD2 gene in 232 unrelated individuals from five ethno-linguistically distinct endogamous tribal populations; Siddis and Gonds of Uttara Kannada district, Karnataka; Varli and Kolgha of Valsad district, Gujarat; and Dangi Konkana of Dang district, Gujarat. The genotype data obtained after molecular analysis of the three DRD2 sites was subjected to statistical analysis such as calculation of allele frequencies, haplotype frequencies among others. Subsequently, a neighbor-joining tree was also constructed from the data obtained.
Results:
The three DRD2 sites were found to be polymorphic in all the populations. All the populations showed high levels of heterozygosities. Out of the eight possible haplotypes, most populations shared seven haplotypes. Of all the populations, Siddis showed the highest frequency of the ancestral haplotype B2D2A1 (11.4%). Significant LD was found to exist for
TaqI
'A' and
TaqI
'B' sites in both the populations.
Conclusion:
The findings are in concurrence with those from other Indian studies, especially from Dravidian-speaking South Indian populations. Similar pattern of diversity observed for ethnically and linguistically diverse populations in the present study is indicative of complex structure of Indian populations.
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Opportunity for natural selection among some selected population groups of Northeast India
p. 61
Farida Ahmed Das, Mithun Sikdar
DOI
:10.4103/0971-6866.69328
PMID
:21031053
Background:
Selection potential based on differential fertility and mortality has been computed for seven population groups inhabiting different geographical locations of Northeast India.
Materials and Methods:
Crow's as well as Johnston and Kensinger's index have been used for the present purpose.
Results and Conclusion:
Irrespective of the methodology, the total index of selection was found to be highest among the Deoris followed by the Kaibartas. The lowest selection index was found among the Oraon population. If the relative contribution of fertility and mortality components to the total index is considered to be multiplicative, it is observed that in all these communities the fertility component exceeds that of mortality component, which may indicate initiation of demographic transitional phase in the selected populations with the betterment of healthcare and socioeconomic condition within the last few decades.
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Genetic variations of
β-MYH7
in hypertrophic cardiomyopathy and dilated cardiomyopathy
p. 67
Reena Tanjore, Advithi RangaRaju, Shivani Vadapalli, Sushant Remersu, Calambur Narsimhan, Pratibha Nallari
DOI
:10.4103/0971-6866.69348
PMID
:21031054
Context:
Hypertrophic cardiomyopathy (HCM) is known to be manifested by mutations in 12 sarcomeric genes and dilated cardiomyopathy (DCM) is known to manifest due to cytoskeletal mutations. Studies have revealed that sarcomeric mutations can also lead to DCM. Therefore, in the present study, we have made an attempt to compare and analyze the genetic variations of beta-myosin heavy chain gene (β-MYH7), which are interestingly found to be common in both HCM and DCM. The underlying pathophysiological mechanism leading to two different phenotypes has been discussed in this study. Till date, about 186 and 73 different mutations have been reported in HCM and DCM, respectively, with respect to this gene.
Aim:
The screening of β-MYH7 gene in both HCM and DCM has revealed some common genetic variations. The aim of the present study is to understand the pathophysiological mechanism underlying the manifestation of two different phenotypes.
Materials and Methods:
100 controls, 95 HCM and 97 DCM samples were collected. Genomic DNA was extracted following rapid nonenzymatic method as described by Lahiri and Nurnberger (1991), and the extracted DNA was later subjected to polymerase chain reaction (PCR) based single stranded conformation polymorphism (SSCP) analysis to identify single nucleotide polymorphism (SNP)s/mutations associated with the diseased phenotypes.
Results and Conclusion:
Similar variations were observed in β-MYH7 exons 7, 12, 19 and 20 in both HCM and DCM. This could be attributed to impaired energy compromise, or to dose effect of the mutant protein, or to even environmental factors/modifier gene effects wherein an HCM could progress to a DCM phenotype affecting both right and left ventricles, leading to heart failure.
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Association of polymorphisms in leptin receptor gene with obesity and type 2 diabetes in the local population of Coimbatore
p. 72
Devi Murugesan, Thirunavukkarasu Arunachalam, Viraragavan Ramamurthy, Selvi Subramanian
DOI
:10.4103/0971-6866.69350
PMID
:21031055
Background:
Candidate gene association studies are very relevant to the area of clinical pharmacology. As information on candidate genes and candidate single nucleotide polymorphisms increases, a number of such candidates can be studied in a population to explore their association with their susceptible disease. One such attractive and popular Single Nucleotide Polymorphism (SNP) candidate for obesity is the gene coding for leptin receptor. The leptin receptor gene (LEPR) polymorphism plays an important role in obesity and type 2 diabetes. But the role of this polymorphism is not yet studied in Indian population. Hence, the study focused to explore the association of leptin receptor polymorphisms (K109R, Q223R and K656N) with obesity and type 2 diabetes in both diabetic and non-diabetic subjects recruited from the local population of Coimbatore.
Materials and Methods:
Genotypic analysis for the three polymorphisms has been made for 300 subjects (150 diabetic and 150 non-diabetic) with the age range of 40-60 years using conventional Polymerase chain reaction (PCR)-restriction fragment length polymorphism (RFLP) techniques in a case-control fashion. Allele frequencies were estimated based on the gene count method. Correlation was made with phenotypic variables including body mass index (BMI), waist-to-hip ratio (WHR), insulin and leptin levels for those polymorphisms.
Results and Conclusion:
Among the polymorphisms tested in this study, significant association with BMI (
P
< 0.05), WHR (
P
< 0.05) leptin (
P
< 0.001) and insulin (
P
< 0.0001) was observed for the SNP Q223R, whereas in the case of the other two polymorphisms the association was not statistically significant. The significance value was calculated based on the c
2
test. The controls are also found to have a higher frequency of homozygous mutants for Q223R and are significantly associated with obesity. These findings support the hypothesis that Q223R polymorphism is associated with obesity. It can be speculated that the controls showing the same allele may develop Type 2 diabetes at a later stage and Q223R can act as a strong marker.
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Null association between
ACE
gene
I/D
polymorphism and diabetic nephropathy among multiethnic Malaysian subjects
p. 78
Jaime J Jayapalan, Sekaran Muniandy, Siew P Chan
DOI
:10.4103/0971-6866.69351
PMID
:21031056
Background:
Wide inter-ethnic allelic variations of the Angiotensin Converting Enzyme (
ACE)
i nsertion-deletion (I/D) gene polymorphism were thought to be responsible for the conflicting gene-diabetic nephropathy disease association worldwide. We have investigated the genetic susceptibility of the
ACE
gene to diabetic nephropathy in the multiethnic Malaysian population.
Materials and Methods:
A total of 137 healthy (control) and 256 diabetic subjects were recruited. The diabetic subjects were further subdivided according to their nephropathy status based on urinary albumin-creatinine ratio (ACR) and glomerular filtration rate (GFR). Triple primer polymerase chain reaction (PCR) was used for
ACE
I/D genotyping. Subsequently, populationwide genetic analysis and gene-disease association studies were performed.
Results:
The genotype frequencies in all subgroups were in Hardy-Weinberg equilibrium. Similar allelic and genotypic frequency of
ACE
I/D gene polymorphism was observed between healthy controls versus pooled type 2 diabetes mellitus (T2DM) subjects, and normoalbuminuria versus microalbuminuria, macroalbuminuria and End Stage Renal Failure (ESRF) (
P
> 0.05). Neither ethnicity nor gender exerted any influence on the
ACE
I/D gene polymorphism (
P
> 0.05), with the exception of the Chinese ethnic group which exhibited a higher frequency of ID genotype (
P
= 0.042). A multinomial logistic regression model showed that predictive factors including age, systolic blood pressure (SBP), high density lipoprotein (HDL) and glycosylated hemoglobin (HbA1C) were independently associated with diabetic nephropathy, in that order.
Conclusion:
The I/D polymorphism of the
ACE
gene is not significantly associated with both T2DM and/or diabetic nephropathy in this Malaysian population regardless of ethnicity and gender.
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Investigation of chromosomal aberrations in Egyptian hepatocellular carcinoma patients by fluorescence
in situ
hybridization
p. 87
Magdy S Aly, Abeer A Bahnassy, Zekri N Abdel-Rahman
DOI
:10.4103/0971-6866.69370
PMID
:21031057
Background and Aims:
Hepatocellular carcinoma (HCC) is a very common and highly malignant tumor, associated mainly with chronic viral hepatitis, cirrhosis of any cause, aflatoxin exposure and ethanol consumption. Cytogenetic analysis on HCC has been limited because of poor hepatocyte growth
in vitro
. Conventional cytogenetic studies have demonstrated frequent abnormalities of specific chromosomes in HCC. Molecular cytogenetic approaches have been applied only rarely in the characterization of HCC. The main aim of this study was to evaluate genetic aberrations of different chromosomes in HCC. The study included 35 patients with HCC, who have been diagnosed and treated at National Cancer Institute, Cairo University, Egypt. The clinico-pathologic features of the studied patient were collected from patient's files.
Materials and Methods:
Interphase cytogenetics by fluorescence
in situ
hybridization with the use of a panel of centromere-associated DNA probes for chromosomes 1, 4, 8, 9, 13, 17, 20 and Y were performed on paraffin-embedded HCC specimens.
Results:
The most common chromosomal aberrations detected were gain of chromosomes 8 in 12 cases (34.28%), 17 in 6 cases (17.14%). Loss of chromosome Y was detected in 6 of male cases (30%). Monosomy 4 was also detected in 5 cases (14.28%). Negative correlation could be detected only between chromosome 4 and 8. (r = -0.381,
P
< 0.05). Correlations between gain or loss of chromosomes and the different clinicopathologic parameters in the patients investigated, indicated negative correlation between: chromosome Y and age and chromosome 1 and cirrhosis.
Conclusion:
Gains and losses of DNA found in this study probably involve oncogenes and tumor suppressor genes that play a role in the puzzle of hepatocarcinogenesis.
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CASE REPORTS
Triploidy in a fetus following amniocentesis referred for maternal serum screening test at second trimester
p. 94
E Bagherizadeh, M Oveisi, Z Hadipour, A Saremi, Y Shafaghati, F Behjati
DOI
:10.4103/0971-6866.69371
PMID
:21031058
Amniocentesis was carried out at 17 weeks gestation in a 27-year-old woman, following an abnormal maternal serum screening (MSS) test. MSS test was carried out primarily to estimate the risk of trisomy for chromosome 21. The maternal serum markers used were alpha-fetoprotein (AFP), human chorionic gonadotrophin (hCG), and unconjugated estriol (uE3), together with maternal age. The fetus was identified as screen-positive for Edward's syndrome (trisomy 18), with low uE3, normal AFP and hCG levels. The calculated risk for trisomy 18 was more than 1:50. To identify any possible chromosomal abnormality, cytogenetic investigation was carried out on the amniotic fluid sample. The fetus's karyotype showed triploidy with 69, XXX chromosome complement in all the metaphase spreads obtained from three different cultures, using GTG banding technique. Upon termination of the fetus, gross abnormalities indicative of triploidy were present in the fetus.
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Phenotypic correlations in a patient with ring chromosome 22
p. 97
Osman Demirhan, Erdal Tunç
DOI
:10.4103/0971-6866.69372
PMID
:21031059
Ring chromosome 22, a rare cytogenetic anomaly, has been described in over 60 cases in the medical literature. The aim of this report was to present a case carrying ring chromosome 22, and her family. It is a case report of a patient presented at Medical Faculty of Ηukurova University in Turkey. An 8-year-old girl with ring chromosome 22 and her family were evaluated cytogenetically and clinically. A chromosome analysis of the proband revealed a
de novo
46,XX,r(22)(p11.2;q13) karyotype. Our subject demonstrated the prominent features of this syndrome including profound mental retardation, language impairment, dysmorphic features, lack of speech, hyperactivity, and behavioral disorders. There is lack of consistency between the physical abnormalities that we observed in our subject and those observed for such patients in the literature. The wide range of manifestations observed in patients with this cytogenetic alteration is probably due to size differences in the deleted region.
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LETTERS TO EDITOR
Sickle cell hemoglobinopathies in district Bhopal
p. 100
C. B. S. Dangi, M Sajid, GK Sawke, J Ambhore
DOI
:10.4103/0971-6866.69373
PMID
:21031060
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Significance of t (8: 14) in CLL?
p. 102
KC Lakshmaiah, S Tejinder, Prasanna Kumari, Mangala M Gowri, CT Satheesh, D Lokanatha, Abraham L Jacob
DOI
:10.4103/0971-6866.69374
PMID
:21031061
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© 2006 - Indian Journal of Human Genetics | Published by
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